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Publications

Research and reviews from PathGen and partner institutions.

  1. Review

    Platforms for artificial intelligence-enabled infectious disease surveillance (opens in a new tab)

    Marya Getchell, Michael Barber, Thomas Carpino and 13 others · npj Digital Medicine

    A review of AI-enabled infectious disease surveillance platforms, with PathGen as one example.

    doi:10.1038/s41746-026-03189-x
  2. Review

    National investment case development for pathogen genomics (opens in a new tab)

    Yoong Khean Khoo, Suci Wulandari, Marya Getchell and 12 others · Cell Genomics

    A stepwise national framework for costing and justifying multi-pathogen genomic surveillance.

    doi:10.1016/j.xgen.2025.100781
  3. Article

    Pathogen genomic surveillance status among lower resource settings in Asia (opens in a new tab)

    Marya Getchell, Suci Wulandari, Ruklanthi de Alwis and 43 others · Nature Microbiology

    A 13-country Asia PGI assessment of next-generation sequencing capacity for pathogen surveillance.

    doi:10.1038/s41564-024-01809-4
  4. Review

    Advancing pathogen genomics in resource-limited settings (opens in a new tab)

    Paul Michael Pronyk, Ruklanthi de Alwis, Rebecca Rockett and 20 others · Cell Genomics

    A public-health framework for embedding pathogen genomics in national surveillance in resource-limited settings.

    doi:10.1016/j.xgen.2023.100443